How to anonymize (and pseudonymize) clinical data

Anonymization and pseudonymization are not the same. Learn when to use each and how to implement them correctly.

  1. 1

    Distinguish anonymization from pseudonymization

    Anonymization = impossible to re-identify. Pseudonymization = direct identifiers replaced but re-identification possible via separate key.

  2. 2

    Identify all identifying variables

    Direct: name, SSN, medical record number. Indirect (quasi-identifiers): birth date, zip code, occupation.

  3. 3

    Define your pseudonymization scheme

    Typical: subject ID like 'US01-001' (site + order). Key kept separate from the analysis dataset.

  4. 4

    Generalize quasi-identifiers

    Birth date → year. Zip code → state. Age → 5-year bracket. Evaluate k-anonymity.

  5. 5

    Store the key separately

    Re-identification key NEVER in the same repository as clinical data. Ideally a different role (DPO/Privacy Officer).

  6. 6

    Document the process

    Your institution's DPO must know and approve the scheme. Documented in RoPA and DPIA if applicable.

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